> For the complete documentation index, see [llms.txt](https://docs.nimbusimage.com/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://docs.nimbusimage.com/documentation.md).

# Documentation

- [Images, datasets, and collections](https://docs.nimbusimage.com/documentation/images-datasets-and-collections.md)
- [File formats](https://docs.nimbusimage.com/documentation/images-datasets-and-collections/file-formats.md): Files you can import to NimbusImage.
- [Managing files](https://docs.nimbusimage.com/documentation/images-datasets-and-collections/managing-files.md)
- [Publishing to Zenodo](https://docs.nimbusimage.com/documentation/images-datasets-and-collections/publishing-to-zenodo.md): Archive an entire project—image files, annotations, and metadata—to Zenodo with a permanent DOI to satisfy data sharing and archiving requirements.
- [Viewing your image dataset](https://docs.nimbusimage.com/documentation/viewing-your-data.md)
- [Analyzing image data with objects, connections, and properties](https://docs.nimbusimage.com/documentation/analyzing-image-data-with-objects-connections-and-properties.md)
- [Tools for making objects](https://docs.nimbusimage.com/documentation/analyzing-image-data-with-objects-connections-and-properties/tools-for-making-objects.md)
- [Tools for connecting objects](https://docs.nimbusimage.com/documentation/analyzing-image-data-with-objects-connections-and-properties/tools-for-connecting-objects.md)
- [Measuring object properties](https://docs.nimbusimage.com/documentation/analyzing-image-data-with-objects-connections-and-properties/measuring-object-properties.md)
- [Analysis plots and gating](https://docs.nimbusimage.com/documentation/analyzing-image-data-with-objects-connections-and-properties/analysis-plots-and-gating.md): Plot property values against each other and select populations by drawing gates
- [Spatial transcriptomics](https://docs.nimbusimage.com/documentation/analyzing-image-data-with-objects-connections-and-properties/spatial-transcriptomics.md): Explore spatial-transcriptomics data such as 10x Xenium: view individual molecules, use any gene as a measurement, compare expression between groups, and compute neighborhood and region statistics
- [Interacting with objects](https://docs.nimbusimage.com/documentation/analyzing-image-data-with-objects-connections-and-properties/interacting-with-objects.md)
- [Working with large annotation datasets](https://docs.nimbusimage.com/documentation/analyzing-image-data-with-objects-connections-and-properties/large-annotation-datasets.md)
- [Importing and exporting objects and properties](https://docs.nimbusimage.com/documentation/analyzing-image-data-with-objects-connections-and-properties/importing-and-exporting-objects-and-properties.md)
- [Image processing](https://docs.nimbusimage.com/documentation/image-processing.md)
- [Snapshots](https://docs.nimbusimage.com/documentation/snapshots.md): How to use Snapshots to "bookmark" and download image and movies from your data
- [Time lapse mode](https://docs.nimbusimage.com/documentation/time-lapse-mode.md): How to track and analyze objects across time using Time lapse mode
- [Nimbus AI](https://docs.nimbusimage.com/documentation/nimbus-ai.md): Use Nimbus AI, a conversational assistant that can drive the NimbusImage interface, run analyses, and answer questions about how the app works